Programming Life: Gigabase

Brogramming for life: Gigabase is your virtual cell. Give it infrastructure, give it metabolites. Add metabolism and protein synthesis. Finally design some DNA and some transporters. Press simulate and see how the metabolites are transpoterd, consumed and converted, while the other compounds are produced and synthesized. One day the virutal cell will turn design into real biological computers.

View the Project on GitHub SleeplessByte/programming-life

View the Wiki on Github SleeplessByte/programming-life/wiki

Code, Coffee, Biology

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$ cd your_repo_root/repo_name
$ git fetch origin
$ git checkout gh-pages

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Seminars

Kickoff: 1. Endy - Adventures in synthetic biology; Slides
Introduction to molecular Biology: 2.1. Understanding bioinformatics; 2.2. Building biotechnology; Slides; Summary
Models for biobricks, gates and cel-elements: 3.1 Synthetic gene networks; 3.2. Mathematics of biology; Summary
Synthetic Biology and iGEM: 4.1. Forster: MSB - 2006; 4.2. RAEng: Synthetic biology - 2009
Overview of bioinformatics: 5.1. What is bioinformatics; 5.2. Bioinformatics Poster; 5.3. Bioinformatics Challenges for Personalized Medicine; 5.4. Trends in Computatioal Biology; Slides; Summary

Deliverables

March 8^th: Draft initial Product Vision and Planning
March 15^th: Final Initial Product Vision and Planning; First version of Emergent Architectural Design; First Scrum Plan
March 22^nd: Draft Context Seminar Report
April 5^th: Final Context Seminar Report
Week 8 of Q3 (Week 14): First Peer-Review
May 3^rd: Product Demo; Draft Emergent Architecture design (for feedback); Upload source code for first evaluation by SIG
Week 8 of Q4 (Week 24): Second Peer-Review
May 31^st: Draft Product Vision and Planning; Draft Emergent Architectural Design; Draft Report and Product
June 14^th: Final Product Vision and Planning; Final Emergent Architectural Design; Final Report and Product; Upload source code for final evaluation by SIG

Authors and Contributors

Derk-Jan Karrenbeld
@SleeplessByte
4021967
Joost Verdoorn
@joostverdoorn
1545396
Steffan Sluis
@steffansluis
4088816
Tung Phan
@ttphan
4004868
Vincent Robbemond
@VincentRbbmnd
4174097

Support or Contact

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